Origination, Expansion, Evolutionary Trajectory, and Expression Bias of AP2/ERF Superfamily in Brassica napus
Identifieur interne : 000095 ( Main/Exploration ); précédent : 000094; suivant : 000096Origination, Expansion, Evolutionary Trajectory, and Expression Bias of AP2/ERF Superfamily in Brassica napus
Auteurs : Xiaoming Song [République populaire de Chine] ; Jinpeng Wang [République populaire de Chine] ; Xiao Ma [République populaire de Chine] ; Yuxian Li [République populaire de Chine] ; Tianyu Lei [République populaire de Chine] ; Li Wang [République populaire de Chine] ; Weina Ge [République populaire de Chine] ; Di Guo [République populaire de Chine] ; Zhenyi Wang [République populaire de Chine] ; Chunjin Li [République populaire de Chine] ; Jianjun Zhao [République populaire de Chine] ; Xiyin Wang [République populaire de Chine]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2016.
Abstract
The AP2/ERF superfamily, one of the most important transcription factor families, plays crucial roles in response to biotic and abiotic stresses. So far, a comprehensive evolutionary inference of its origination and expansion has not been available. Here, we identified 515
Url:
DOI: 10.3389/fpls.2016.01186
PubMed: 27570529
PubMed Central: 4982375
Affiliations:
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last="Lei">Tianyu Lei</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Wang, Li" sort="Wang, Li" uniqKey="Wang L" first="Li" last="Wang">Li Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Ge, Weina" sort="Ge, Weina" uniqKey="Ge W" first="Weina" last="Ge">Weina Ge</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and 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Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Li, Chunjin" sort="Li, Chunjin" uniqKey="Li C" first="Chunjin" last="Li">Chunjin Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Zhao, Jianjun" sort="Zhao, Jianjun" uniqKey="Zhao J" first="Jianjun" last="Zhao">Jianjun Zhao</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Key Laboratory of Vegetable Germplasm and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Agricultural University of Hebei</institution><country>Baoding, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Wang, Xiyin" sort="Wang, Xiyin" uniqKey="Wang X" first="Xiyin" last="Wang">Xiyin Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27570529</idno><idno type="pmc">4982375</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4982375</idno><idno type="RBID">PMC:4982375</idno><idno type="doi">10.3389/fpls.2016.01186</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000F34</idno><idno type="wicri:Area/Pmc/Curation">000F33</idno><idno type="wicri:Area/Pmc/Checkpoint">000077</idno><idno 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sortKey="Wang, Jinpeng" sort="Wang, Jinpeng" uniqKey="Wang J" first="Jinpeng" last="Wang">Jinpeng Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Ma, Xiao" sort="Ma, Xiao" uniqKey="Ma X" first="Xiao" last="Ma">Xiao Ma</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Library, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Li, Yuxian" sort="Li, Yuxian" uniqKey="Li Y" first="Yuxian" last="Li">Yuxian Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lei, Tianyu" sort="Lei, Tianyu" uniqKey="Lei T" first="Tianyu" last="Lei">Tianyu Lei</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Wang, Li" sort="Wang, Li" uniqKey="Wang L" first="Li" last="Wang">Li Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Ge, Weina" sort="Ge, Weina" uniqKey="Ge W" first="Weina" last="Ge">Weina Ge</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Guo, Di" sort="Guo, Di" uniqKey="Guo D" first="Di" last="Guo">Di Guo</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Wang, Zhenyi" sort="Wang, Zhenyi" uniqKey="Wang Z" first="Zhenyi" last="Wang">Zhenyi Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Li, Chunjin" sort="Li, Chunjin" uniqKey="Li C" first="Chunjin" last="Li">Chunjin Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Zhao, Jianjun" sort="Zhao, Jianjun" uniqKey="Zhao J" first="Jianjun" last="Zhao">Jianjun Zhao</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Key Laboratory of Vegetable Germplasm and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Agricultural University of Hebei</institution><country>Baoding, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Wang, Xiyin" sort="Wang, Xiyin" uniqKey="Wang X" first="Xiyin" last="Wang">Xiyin Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Life Sciences, North China University of Science and Technology</institution><country>Tangshan, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The AP2/ERF superfamily, one of the most important transcription factor families, plays crucial roles in response to biotic and abiotic stresses. So far, a comprehensive evolutionary inference of its origination and expansion has not been available. Here, we identified 515 <italic>AP2/ERF</italic> genes in <italic>B. napus</italic>, a neo-tetraploid forming ~7500 years ago, and found that 82.14% of them were duplicated in the tetraploidization. A prominent subgenome bias was revealed in gene expression, tissue-specific, and gene conversion. Moreover, a large-scale analysis across plants and alga suggested that this superfamily could have been originated from AP2 family, expanding to form other families (ERF, and RAV). This process was accompanied by duplicating and/or alternative deleting AP2 domain, intragenic domain sequence conversion, and/or by acquiring other domains, resulting in copy number variations, alternatively contributing to functional innovation. We found that significant positive selection occurred at certain critical nodes during the evolution of land plants, possibly responding to changing environment. In conclusion, the present research revealed origination, functional innovation, and evolutionary trajectory of the AP2/ERF superfamily, contributing to understanding their roles in plant stress tolerance.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Albert, V A" uniqKey="Albert V">V. A. Albert</name></author><author><name sortKey="Barbazuk, W B" uniqKey="Barbazuk W">W. B. Barbazuk</name></author><author><name sortKey="Depamphilis, C W" uniqKey="Depamphilis C">C. W. dePamphilis</name></author><author><name sortKey="Der, J P" uniqKey="Der J">J. P. Der</name></author><author><name sortKey="Leebens Mack, J" uniqKey="Leebens Mack J">J. Leebens-Mack</name></author><author><name sortKey="Ma, H" uniqKey="Ma H">H. Ma</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Black, D L" uniqKey="Black D">D. L. 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Zhang</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Song, Xiaoming" sort="Song, Xiaoming" uniqKey="Song X" first="Xiaoming" last="Song">Xiaoming Song</name></noRegion><name sortKey="Ge, Weina" sort="Ge, Weina" uniqKey="Ge W" first="Weina" last="Ge">Weina Ge</name><name sortKey="Guo, Di" sort="Guo, Di" uniqKey="Guo D" first="Di" last="Guo">Di Guo</name><name sortKey="Lei, Tianyu" sort="Lei, Tianyu" uniqKey="Lei T" first="Tianyu" last="Lei">Tianyu Lei</name><name sortKey="Li, Chunjin" sort="Li, Chunjin" uniqKey="Li C" first="Chunjin" last="Li">Chunjin Li</name><name sortKey="Li, Yuxian" sort="Li, Yuxian" uniqKey="Li Y" first="Yuxian" last="Li">Yuxian Li</name><name sortKey="Ma, Xiao" sort="Ma, Xiao" uniqKey="Ma X" first="Xiao" last="Ma">Xiao Ma</name><name sortKey="Wang, Jinpeng" sort="Wang, Jinpeng" uniqKey="Wang J" first="Jinpeng" last="Wang">Jinpeng Wang</name><name sortKey="Wang, Li" sort="Wang, Li" uniqKey="Wang L" first="Li" last="Wang">Li Wang</name><name sortKey="Wang, Xiyin" sort="Wang, Xiyin" uniqKey="Wang X" first="Xiyin" last="Wang">Xiyin Wang</name><name sortKey="Wang, Zhenyi" sort="Wang, Zhenyi" uniqKey="Wang Z" first="Zhenyi" last="Wang">Zhenyi Wang</name><name sortKey="Zhao, Jianjun" sort="Zhao, Jianjun" uniqKey="Zhao J" first="Jianjun" last="Zhao">Jianjun Zhao</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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